Data Science newsletter – June 7, 2019

Newsletter features journalism, research papers, events, tools/software, and jobs for June 7, 2019

GROUP CURATION: N/A

 
 
Data Science News



Combating Climate Change With Artificial Intelligence

Columbia University, Columbia News


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Thinking about what could lie ahead when climate-induced storms the strength of Hurricane Maria—the deadliest storm to hit Puerto Rico in almost a century—strike again keeps Maria Uriarte up at night.

“We have to prepare to minimize the damage of increasingly severe weather,” said Uriarte, a professor in Columbia’s Department of Ecology, Evolution and Environmental Biology. “Two years ago, Hurricane Maria destroyed thousands of acres of rainforests in Puerto Rico. But not all species were damaged. There were winners and losers—those that were resistant to storms and others that were not.”

Uriarte, who has been studying Puerto Rico’s trees for 15 years, said new tools are needed to predict the impact of a warming climate on forests. Not only do trees provide physical barriers against severe weather, they remove large amounts of carbon dioxide from the atmosphere, incorporating it through photosynthesis into their tissues as they grow.

“The challenge is to determine what impact past severe weather patterns have had on hurricane-resilient species,” Uriarte said.


The Artists Using Artificial Intelligence to Dream Up the Future of Music

Spin magazine, Rob Arcand


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As machine learning applications from big tech companies permeate increasingly large swaths of our lives, artists like Holly Herndon, YACHT, and Dadabots are using similar tools for their creative potential, crafting forward-looking albums in collaboration with artificial intelligence. Can they liberate A.I. from the banal and sinister world of email auto-complete suggestions and facial recognition software? And what will the music sound like if they do?


On YouTube’s Digital Playground, an Open Gate for Pedophiles

The New York Times, Max Fisher and Amanda Taub


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The video of Christiane’s daughter was promoted by YouTube’s systems months after the company was alerted that it had a pedophile problem. In February, Wired and other news outlets reported that predators were using the comment section of YouTube videos with children to guide other pedophiles.

That month, calling the problem “deeply concerning,” YouTube disabled comments on many videos with children in them.


Computational Linguistics: “Artificial Intelligence Doesn’t Make After Work Plans”

Zeit Online, Jochen Wegner


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It could be that Richard Socher’s operating system just runs with more energy than other people’s. He has just flown in from California and his body clock is telling him it’s still 4 a.m. Already, though, he has delivered a keynote address, participated in a panel and held a question-and-answer session at the START Summit in St. Gallen, Switzerland, an important innovation conference.

Despite all that, he’s in a good mood as he poses for the ZEIT ONLINE photographer and later helps carry her flash equipment. He then sits down in a drafty corner of the congress hall for the following three-hour interview. After an hour, he remembers that he hasn’t yet eaten today. He has a breakfast of Red Bull and a ham and cheese croissant.


A digital health research platform for community engagement, recruitment, and retention of sexual and gender minority adults in a national longitudinal cohort study–—The PRIDE Study

Journal of the American Medical Informatics Association, Mitchell R. Lunn et al.


from

Materials and Methods

We partnered with design and development firms and engaged SGM community members to build a secure, cloud-based, containerized, microservices-based, feature-rich, research platform. We created PRIDEnet, a national network of individuals and organizations that actively engaged SGM communities in all stages of health research. The PRIDE Study participants were recruited via in-person outreach, communications to PRIDEnet constituents, social media advertising, and word-of-mouth. Participants completed surveys to report demographic as well as physical, mental, and social health data.
Results

We built a secure digital research platform with engaging functionality that engaged SGM people and recruited and retained 13 731 diverse individuals in 2 years. A sizeable sample of 3813 gender minority people (32.8% of cohort) were recruited despite representing only approximately 0.6% of the population. Participants engaged with the platform and completed comprehensive annual surveys— including questions about sensitive and stigmatizing topics— to create a data resource and join a cohort for ongoing SGM health research.
Discussion

With an appealing digital platform, recruitment and engagement in online-only longitudinal cohort studies are possible. Participant engagement with meaningful, bidirectional relationships creates stakeholders and enables study cocreation. Research about effective tactics to engage, recruit, and maintain active participation from all communities is needed.
Conclusion

This digital research platform successfully recruited and engaged diverse SGM participants in The PRIDE Study. A similar approach may be successful in partnership with other underrepresented and vulnerable populations.


Trump’s Next Trade War Target: Chinese Students at Elite Schools

Bloomberg News


from

Several Chinese graduate students and academics told Bloomberg News in recent weeks that they found the U.S. academic and job environment increasingly unfriendly. Emory University dismissed two Chinese-American professors on May 16, and China’s Education Ministry issued a warning Monday on the risks of studying in the U.S. as student visa rejections soar.


Underrepresented faculty play a disproportionate role in advancing diversity and inclusion

Nature Ecology & Evolution; Miguel F. Jimenez, Theresa M. Laverty, Sara P. Bombaci, Kate Wilkins, Drew E. Bennett & Liba Pejchar


from

A diverse and inclusive scientific community is more productive, innovative and impactful, yet ecology and evolutionary biology continues to be dominated by white male faculty. We quantify faculty engagement in activities related to diversity and inclusion and identify factors that either facilitate or hinder participation. Through a nationwide survey, we show that faculty with underrepresented identities disproportionally engage in diversity and inclusion activities, yet such engagement was not considered important for tenure. Faculty perceived time and funding as major limitations, which suggests that institutions should reallocate resources and reconsider how faculty are evaluated to promote shared responsibility in advancing diversity and inclusion.


Arturo Announces Seed Series Close and Spin-out from American Family Insurance

Business Wire, Arturo


from

Arturo grew out of investment and more than three years of research by American Family Insurance on the application of artificial intelligence (AI) and deep learning to satellite, aerial, drone, and ground-level imagery to accurately assess physical property characteristics for residential and commercial properties.

Arturo’s AI-powered analytics generate detailed property information often in under five seconds. It enables a variety of businesses that insure, lend, invest, or manage residential or commercial properties to make more informed decisions and better manage risk with the most up to date information available.

What’s most compelling about Arturo AI, is that it was created from within an insurance company with product development experts and claims and underwriting professionals giving feedback as the technology was built. That work behind-the-scenes, in a test-and-learn environment with American Family and several leading insuretech startups, distinguishes it from similar companies.


2020 Census – Who’s At Risk of Being Miscounted?

The Urban Institute; Diana Elliott, Charmaine Runes Rob Santos & Steven Martin


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The 2020 Census faces unprecedented challenges and threats to its accuracy. Demographic changes over the past decade will make the population harder to count. And underfunding, undertested process changes, and the last-minute introduction of a citizenship question could result in serious miscounts, potentially diminishing communities’ rightful political voice and share of funding.

To understand how these factors could affect the 2020 Census counts, we created projections under three scenarios—reflecting the miscount risk as low, medium, or high.


Ready to store your data on DNA? Key scaling challenge has just been cracked

ZDNet, Liam Tung


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Researchers develop a file system for handling exabytes of data stored on DNA databases.


In Fierce AI Race, Everybody Wants This New Human-Like Chip

Bloomberg Businessweek, Austin Carr


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When Knowles and the more business-minded Toon founded Graphcore in 2016, they put “less precise” computing at the heart of their chips, which they call intelligence processing units, or IPUs. “The concepts in your brain are quite vague. It’s really the aggregation of very approximate data points that causes you to have precise thoughts,” says Knowles, whose English accent and frequent chuckle invite comparisons to a Hogwarts headmaster. (Given his constant whiteboard pontificating, Toon jokingly addresses him as “Professor Knowles.”) There are various theories on why human intelligence forms this way, but for machine learning systems, which need to process huge and amorphous information structures known as “graphs,” building a chip that specializes in connecting nodelike data points may prove key in the evolution of AI. “We wanted to build a very high-performance computer that manipulates numbers very imprecisely,” Knowles says.


Apple breathes new life into HomeKit with a focus on privacy and security

Staceyon on IoT, Kevin C. Tofel


from

Given the past few years of history, I wasn’t expecting to hear much about HomeKit this week from Apple’s WorldWide Developer Conference. And yet Apple proved me wrong, announcing HomeKit in routers and more secure video from HomeKit-enabled webcams. Oh, and that video ties directly into Apple’s iCloud plans, which could generate more revenue for the company as well.

IoT devices on home networks have long been a concern of many homeowners and for good reason: It seems like once a month we hear about some security issue with certain IoT devices that could allow a nefarious third-party to access your home’s data or remotely control something in your home. Apparently, Apple decided to address this valid concern through the home router. Or more specifically, a home router from specific companies that are willing to work with Apple.


This startup does machine learning with privacy in mind

Staceyon on IoT, Stacey Higginbotham


from

I’ve been a little frustrated with the state of the connected security market for a while now. After a spate of products such as Canary and Piper, which reconfigured the alarm system market with point products that use sensors integrated into a single hub to determine if a break-in has occurred, the market somewhat stagnated.

We still have a cluster of sensors on our doors, windows, and walls aimed at detecting when something opens, closes, moves, or breaks something inside the home. Amazon’s launch of the Alexa Guard glass break and smoke alarm detection feature as part of the Echo device represented a leap forward to that smarter security system, but it felt like a small leap.

Enter Minut, a five-year-old company based in Malmo, Sweden. The firm has built a device it calls Point that uses sensors and machine learning to determine if someone has broken into your home or to simply to let you know when something is wrong. Its most interesting feature is that it has done this in a way that protects the users’ privacy, even as it sends data to the cloud.


For Hire

The California Sunday Magazine, As told to Joy Shan and Tom Colligan


from

The job market through the eyes of college graduates in search of work


A new model of genetic testing is emerging

Business Insider, Nicky Lineaweaver


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Consumer interest in DNA testing has exploded, helping to ignite a new “hybrid” model of genetic testing that blends elements of traditional laboratories with direct-to-consumer models (DTC) models like 23andMe, according to new research published in JAMA Network.

It’s tough to quantify what proportion of genetic tests is fulfilled via hybrid models versus traditional and DTC models, but data suggests hybrid labs are eating up a big chunk of genetic testing: A large traditional laboratory recently reported that it’s conducted 4 million genetic tests since launching in 1991, while a hybrid laboratory reported it’s conducted 1.4 million tests since its founding in 2004.

Hybrid DNA labs emerged to bridge the gap left by traditional and DTC genetic tests — which are centric to either the clinician or the consumer, not both.

 
Events



2019 Sage Assembly & 10th Anniversary

Sage Bionetworks


from

Seattle, WA July 25. Theme: Open Science and the Role of Common Evidence. Young Investigators Award: “Help us include a new generation of open scientists at this event by encouraging early-career researchers to apply for our Young Investigators Award. Recipients will be featured at the event and will receive a stipend to cover travel and lodging.”


2019 SciPy Sprints

SciPy 2019


from

Austin, TX July 13-14. “The SciPy Conference dedicates the last two days of the week to push our ecosystem forward through developer sprints. It is an informal part of the conference, all about exchanging, hacking and creating. Everyone is welcome regardless of interest, need and programming level.” [registration required]

 
Deadlines



CREATE Better Reasoning research study

“Johns Hopkins APL is recruiting people who love to solve puzzles, logic games, and analytic problems to participate in research studies exploring reasoning in groups.”
 
Tools & Resources



Things you’re probably not using in Python 3 – but should

Data, what now? blog, Vinko Kodžoman


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Many people started switching their Python versions from 2 to 3 as a result of Python EOL. Unfortunately, most Python 3 I find still looks like Python 2, but with parentheses (even I am guilty of that in my code examples in previous posts – Introduction to web scraping with Python). Below, I show some examples of exciting features you can only use in Python 3 in the hopes that it will make solving your problems with Python easier.


Data For Science Newsletter #1

Data For Science, Inc


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A weekly newsletter with a quick overview of the world of Data, Science and Machine Learning.


Invenio RDM: a turn-key open source research data management platform

Invenio Blog, Lars Holm Nielsen


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CERN has partnered with 10 multidisciplinary institutions and companies to build a turn-key open source research data management platform called Invenio RDM, and grow a diverse community to sustain the platform.

 
Careers


Full-time, non-tenured academic positions

Data Analyst



New York University, Institute of Human Development and Social Change; New York, NY

Graduate Outreach and Engagement Coordinator



University of Virginia, School of Engineering and Applied Science; Charlottesville, VA
Internships and other temporary positions

Research Associate (Fixed Term)



University of Cambridge, Cambridge Centre for Ageing and Neuroscience; Cambridge, England
Full-time positions outside academia

PROFESSIONAL STAFF MEMBER



U.S. Senate Committee on Homeland Security and Governmental Affairs; Washington, DC

Executive Director



DataCite; Remote, Europe/USA

NIH Chief Data Strategist and Director, Office of Data Science Strategy, DPCPSI, NIH



National Institutes of Health; Bethesda, MD
Tenured and tenure track faculty positions

Full Professor in Digital Governance



Technical University of Munich, School of Governance; Munich, Germany
Postdocs

Neuroeconomics/Motor Control Postdoc Position



Johns Hopkins University, Kennedy Krieger Institute; Baltimore, MD

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